Return a list of the supported collective variables. makeFunnel(system[, protein, ligand, …]) Calculate the two sets of atom indices, atoms0 and atoms1, that are used to define the funnel collective variable. viewFunnel(system, collective_variable[, …]) Visualise the shape of the funnel defined by the collective variable.
 Distance(atom0, atom1[, hill_width, …]) A class for distance based collective variables. Funnel(atoms0, atoms1[, hill_width, width, …]) A class for a funnel collective variable. RMSD(system, reference, rmsd_indices[, …]) A class for a root-mean-square deviation (RMSD) collective variable. Torsion(atoms[, hill_width, lower_bound, …]) A class for torsion based collective variables.