BioSimSpace.Notebook.View¶
-
class
BioSimSpace.Notebook.
View
(handle)¶ A class for handling interactive molecular visualisations.
-
__init__
(handle)¶ Constructor.
Methods
__init__
(handle)Constructor.
molecule
([index, gui])View a specific molecule.
molecules
([indices, gui])View specific molecules.
nViews
()Return the number of views.
reload
([index, gui])Reload a particular view.
reset
()Reset the object, clearing all view files.
savePDB
(file[, index])Save a specific view as a PDB file.
system
([gui])View the entire molecular system.
-
molecule
(index=0, gui=True)¶ View a specific molecule.
- Parameters
index (int) – The molecule index.
gui (bool) – Whether to display the gui.
-
molecules
(indices=None, gui=True)¶ View specific molecules.
- Parameters
indices ([int], range) – A list of molecule indices.
gui (bool) – Whether to display the gui.
-
nViews
()¶ Return the number of views.
- Returns
num_views – The number of views.
- Return type
int
-
reload
(index=None, gui=True)¶ Reload a particular view.
- Parameters
index (int) – The view index.
gui (bool) – Whether to display the gui.
-
reset
()¶ Reset the object, clearing all view files.
-
savePDB
(file, index=None)¶ Save a specific view as a PDB file.
- Parameters
file (str) – The name of the file to write to.
index (int) – The view index.
-
system
(gui=True)¶ View the entire molecular system.
- Parameters
gui (bool) – Whether to display the gui.
-