BioSimSpace.Notebook.View

class BioSimSpace.Notebook.View(handle)

A class for handling interactive molecular visualisations.

__init__(handle)

Constructor.

Parameters

handle (Process, System System System str, [str]) – A handle to a process, system, molecule, or molecule container, or the path to molecular input file(s).

Methods

__delattr__(name, /)

Implement delattr(self, name).

__dir__()

Default dir() implementation.

__eq__(value, /)

Return self==value.

__format__(format_spec, /)

Default object formatter.

__ge__(value, /)

Return self>=value.

__getattribute__(name, /)

Return getattr(self, name).

__gt__(value, /)

Return self>value.

__hash__()

Return hash(self).

__init__(handle)

Constructor.

__init_subclass__

This method is called when a class is subclassed.

__le__(value, /)

Return self<=value.

__lt__(value, /)

Return self<value.

__ne__(value, /)

Return self!=value.

__new__(**kwargs)

Create and return a new object.

__reduce__()

Helper for pickle.

__reduce_ex__(protocol, /)

Helper for pickle.

__repr__()

Return repr(self).

__setattr__(name, value, /)

Implement setattr(self, name, value).

__sizeof__()

Size of object in memory, in bytes.

__str__()

Return str(self).

__subclasshook__

Abstract classes can override this to customize issubclass().

_create_view([system, view, gui])

Helper function to create the NGLview object.

molecule([index, gui])

View a specific molecule.

molecules([indices, gui])

View specific molecules.

nViews()

Return the number of views.

reload([index, gui])

Reload a particular view.

reset()

Reset the object, clearing all view files.

savePDB(file[, index])

Save a specific view as a PDB file.

system([gui])

View the entire molecular system.

Attributes

__dict__

__doc__

__module__

__weakref__

list of weak references to the object (if defined)