BioSimSpace.Notebook.View

class BioSimSpace.Notebook.View(handle)

A class for handling interactive molecular visualisations.

__init__(handle)

Constructor.

Parameters

handle (Process, System System System str, [str]) – A handle to a process, system, molecule, or molecule container, or the path to molecular input file(s).

Methods

__delattr__(name, /)	Implement delattr(self, name).
__dir__()	Default dir() implementation.
__eq__(value, /)	Return self==value.
__format__(format_spec, /)	Default object formatter.
__ge__(value, /)	Return self>=value.
__getattribute__(name, /)	Return getattr(self, name).
__gt__(value, /)	Return self>value.
__hash__()	Return hash(self).
__init__(handle)	Constructor.
__init_subclass__	This method is called when a class is subclassed.
__le__(value, /)	Return self<=value.
__lt__(value, /)	Return self<value.
__ne__(value, /)	Return self!=value.
__new__(**kwargs)	Create and return a new object.
__reduce__()	Helper for pickle.
__reduce_ex__(protocol, /)	Helper for pickle.
__repr__()	Return repr(self).
__setattr__(name, value, /)	Implement setattr(self, name, value).
__sizeof__()	Size of object in memory, in bytes.
__str__()	Return str(self).
__subclasshook__	Abstract classes can override this to customize issubclass().
_create_view([system, view, gui])	Helper function to create the NGLview object.
molecule([index, gui])	View a specific molecule.
molecules([indices, gui])	View specific molecules.
nViews()	Return the number of views.
reload([index, gui])	Reload a particular view.
reset()	Reset the object, clearing all view files.
savePDB(file[, index])	Save a specific view as a PDB file.
system([gui])	View the entire molecular system.

Attributes

__dict__
__doc__
__module__
__weakref__	list of weak references to the object (if defined)