BioSimSpace.Process.Namd
========================

.. currentmodule:: BioSimSpace.Process

.. autoclass:: Namd

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Namd.__init__
      ~Namd.addArgs
      ~Namd.addToConfig
      ~Namd.clearArgs
      ~Namd.command
      ~Namd.deleteArg
      ~Namd.eta
      ~Namd.exe
      ~Namd.getAngleEnergy
      ~Namd.getArgString
      ~Namd.getArgStringList
      ~Namd.getArgs
      ~Namd.getBondEnergy
      ~Namd.getBoundaryEnergy
      ~Namd.getConfig
      ~Namd.getCurrentAngleEnergy
      ~Namd.getCurrentBondEnergy
      ~Namd.getCurrentBoundaryEnergy
      ~Namd.getCurrentDihedralEnergy
      ~Namd.getCurrentElectrostaticEnergy
      ~Namd.getCurrentGPressure
      ~Namd.getCurrentGPressureAverage
      ~Namd.getCurrentImproperEnergy
      ~Namd.getCurrentKineticEnergy
      ~Namd.getCurrentMiscEnergy
      ~Namd.getCurrentPotentialEnergy
      ~Namd.getCurrentPressure
      ~Namd.getCurrentPressureAverage
      ~Namd.getCurrentProperEnergy
      ~Namd.getCurrentRecord
      ~Namd.getCurrentRecords
      ~Namd.getCurrentStep
      ~Namd.getCurrentSystem
      ~Namd.getCurrentTemperature
      ~Namd.getCurrentTemperatureAverage
      ~Namd.getCurrentTime
      ~Namd.getCurrentTotal2Energy
      ~Namd.getCurrentTotal3Energy
      ~Namd.getCurrentTotalEnergy
      ~Namd.getCurrentVanDerWaalsEnergy
      ~Namd.getCurrentVolume
      ~Namd.getDihedralEnergy
      ~Namd.getElectrostaticEnergy
      ~Namd.getFrame
      ~Namd.getGPressure
      ~Namd.getGPressureAverage
      ~Namd.getImproperEnergy
      ~Namd.getInput
      ~Namd.getKineticEnergy
      ~Namd.getMiscEnergy
      ~Namd.getName
      ~Namd.getOutput
      ~Namd.getPackageName
      ~Namd.getPotentialEnergy
      ~Namd.getPressure
      ~Namd.getPressureAverage
      ~Namd.getProperEnergy
      ~Namd.getRecord
      ~Namd.getRecords
      ~Namd.getSeed
      ~Namd.getStderr
      ~Namd.getStdout
      ~Namd.getStep
      ~Namd.getSystem
      ~Namd.getTemperature
      ~Namd.getTemperatureAverage
      ~Namd.getTime
      ~Namd.getTotal2Energy
      ~Namd.getTotal3Energy
      ~Namd.getTotalEnergy
      ~Namd.getTrajectory
      ~Namd.getVanDerWaalsEnergy
      ~Namd.getVolume
      ~Namd.inputFiles
      ~Namd.insertArg
      ~Namd.isError
      ~Namd.isQueued
      ~Namd.isRunning
      ~Namd.kill
      ~Namd.resetArgs
      ~Namd.resetConfig
      ~Namd.run
      ~Namd.runTime
      ~Namd.setArg
      ~Namd.setArgs
      ~Namd.setConfig
      ~Namd.setName
      ~Namd.setSeed
      ~Namd.start
      ~Namd.stderr
      ~Namd.stdout
      ~Namd.wait
      ~Namd.workDir
      ~Namd.writeConfig