BioSimSpace.Process.Amber
=========================

.. currentmodule:: BioSimSpace.Process

.. autoclass:: Amber

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Amber.__init__
      ~Amber.addArgs
      ~Amber.addToConfig
      ~Amber.clearArgs
      ~Amber.command
      ~Amber.deleteArg
      ~Amber.exe
      ~Amber.getAngleEnergy
      ~Amber.getArgString
      ~Amber.getArgStringList
      ~Amber.getArgs
      ~Amber.getBondEnergy
      ~Amber.getCentreOfMassKineticEnergy
      ~Amber.getConfig
      ~Amber.getCurrentAngleEnergy
      ~Amber.getCurrentBondEnergy
      ~Amber.getCurrentCentreOfMassKineticEnergy
      ~Amber.getCurrentDensity
      ~Amber.getCurrentDihedralEnergy
      ~Amber.getCurrentElectrostaticEnergy
      ~Amber.getCurrentElectrostaticEnergy14
      ~Amber.getCurrentHydrogenBondEnergy
      ~Amber.getCurrentKineticEnergy
      ~Amber.getCurrentNonBondedEnergy14
      ~Amber.getCurrentPotentialEnergy
      ~Amber.getCurrentPressure
      ~Amber.getCurrentRecord
      ~Amber.getCurrentRecords
      ~Amber.getCurrentRestraintEnergy
      ~Amber.getCurrentStep
      ~Amber.getCurrentSystem
      ~Amber.getCurrentTemperature
      ~Amber.getCurrentTime
      ~Amber.getCurrentTotalEnergy
      ~Amber.getCurrentVanDerWaalsEnergy
      ~Amber.getCurrentVirial
      ~Amber.getCurrentVolume
      ~Amber.getDensity
      ~Amber.getDihedralEnergy
      ~Amber.getElectrostaticEnergy
      ~Amber.getElectrostaticEnergy14
      ~Amber.getFrame
      ~Amber.getHydrogenBondEnergy
      ~Amber.getInput
      ~Amber.getKineticEnergy
      ~Amber.getName
      ~Amber.getNonBondedEnergy14
      ~Amber.getOutput
      ~Amber.getPackageName
      ~Amber.getPotentialEnergy
      ~Amber.getPressure
      ~Amber.getRecord
      ~Amber.getRecords
      ~Amber.getRestraintEnergy
      ~Amber.getSeed
      ~Amber.getStderr
      ~Amber.getStdout
      ~Amber.getStep
      ~Amber.getSystem
      ~Amber.getTemperature
      ~Amber.getTime
      ~Amber.getTotalEnergy
      ~Amber.getTrajectory
      ~Amber.getVanDerWaalsEnergy
      ~Amber.getVirial
      ~Amber.getVolume
      ~Amber.inputFiles
      ~Amber.insertArg
      ~Amber.isError
      ~Amber.isQueued
      ~Amber.isRunning
      ~Amber.kill
      ~Amber.resetArgs
      ~Amber.resetConfig
      ~Amber.run
      ~Amber.runTime
      ~Amber.setArg
      ~Amber.setArgs
      ~Amber.setConfig
      ~Amber.setName
      ~Amber.setSeed
      ~Amber.start
      ~Amber.stderr
      ~Amber.stdout
      ~Amber.wait
      ~Amber.workDir
      ~Amber.writeConfig